PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491815.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 272aa    MW: 30109.1 Da    PI: 9.33
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-14101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_016491815.1 101 PWTEEEHRKFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 145
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.05594150IPR017930Myb domain
SuperFamilySSF466893.14E-1896151IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-1897149IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-1198144IPR009057Homeodomain-like
SMARTSM007173.3E-1098148IPR001005SANT/Myb domain
CDDcd001672.48E-9101146No hitNo description
PfamPF002492.4E-11101145IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCST LKCASNGSFI GGLKLFGVQL DISNNASSSS SSIDHLKKSF  60
SLDCLTPPSV NESCEKSTSI NNGYLSDGLV VRVEERKKGV PWTEEEHRKF LIGLEKLGKG  120
DWRGISRNFV TTRTPTQVAS HAQKYFLRQS SLNKKKRRSS LFDMARSNNK MHVDAITMKF  180
KHADNFADCH DTTILTNKDC QEIRASLLDL NSFGEDMSIA KDNQRSENPQ QPEEIYSVPI  240
KKVPNKSISS LGALDLELSL SAPRNIGPIT VT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-63HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491815.10.0PREDICTED: myb-like protein J
TrEMBLA0A0V0HK381e-103A0A0V0HK38_SOLCH; Putative transcription factor MYB1R1-like
STRINGPGSC0003DMT4000009025e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-46MYB_related family protein